Might be that he doesn't have a great fit in the car seat. What type is it? Many infant car seats don't provide a supportive fit and the baby can feel that.
My girl absolutely hated the car seats that also go on the pram. So changed to the type that stays in the car and she has been perfect in it.
Following! Mines exactly the same! He hates his pushchair too! I reckon we can do about 15 mins in before meltdown.